The IBEX imaging Knowledge-Base: a community resource enabling adoption and development of immunofluoresence imaging methods

Autor/innen

  • Z. Yaniv
  • I.U. Anidi
  • L. Arakkal
  • A.J. Arroyo-Mejías
  • R.T. Beuschel
  • K. Börner
  • C.J. Chu
  • B. Clark
  • M.R. Clatworthy
  • J. Colautti
  • F. Coscia
  • J. Croteau
  • S. Denha
  • R. Dever
  • W.O. Dutra
  • S. Fritzsche
  • S. Fullam
  • M.Y. Gerner
  • A. Gola
  • K.J. Gollob
  • J.M. Hernandez
  • J.L. Hor
  • H. Ichise
  • Z. Jing
  • D. Jonigk
  • E. Kandov
  • W. Kastenmüller
  • J.F.E. Koenig
  • A. Kothurkar
  • R.K. Kortekaas
  • A.Y. Kreins
  • I.T. Lamborn
  • Y. Lin
  • K.L.P. Morais
  • A. Lunich
  • J.C.S. Luz
  • R.B. MacDonald
  • C. Makranz
  • V.I. Maltez
  • J.E. McDonough
  • R.V. Moriarty
  • J.M. Ocampo-Godinez
  • V.M. Olyntho
  • A. Oxenius
  • K. Padhan
  • K. Remmert
  • N. Richoz
  • E.C. Schrom
  • W. Shang
  • L. Shi
  • R.M. Shih
  • E. Speranza
  • S. Stierli
  • S.A. Teichmann
  • T.Z. Veres
  • M. Vierhout
  • B.T. Wachter
  • M. Williams
  • N. Zangger
  • R.N. Germain
  • A.J. Radtke

Journal

  • arXiv

Quellenangabe

  • arXiv

Zusammenfassung

  • The iterative bleaching extends multiplexity (IBEX) Knowledge-Base is a central portal for researchers adopting IBEX and related 2D and 3D immunofluorescence imaging methods. The design of the Knowledge-Base is modeled after efforts in the open-source software community and includes three facets: a development platform (GitHub), static website, and service for data archiving. The Knowledge-Base facilitates the practice of open science throughout the research life cycle by providing validation data for recommended and non-recommended reagents, e.g., primary and secondary antibodies. In addition to reporting negative data, the Knowledge-Base empowers method adoption and evolution by providing a venue for sharing protocols, videos, datasets, software, and publications. A dedicated discussion forum fosters a sense of community among researchers while addressing questions not covered in published manuscripts. Together, scientists from around the world are advancing scientific discovery at a faster pace, reducing wasted time and effort, and instilling greater confidence in the resulting data.


DOI

doi:10.48550/arXiv.2412.12965